H3KMLBGXC_n01_0801-14G-WRKY33.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3KMLBGXC_n01_0801-14G-WRKY33.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19996926
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	157978	0.790011424755985	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCGAAGATCTCGTATGC	126211	0.6311520080636394	TruSeq Adapter, Index 10 (97% over 36bp)
CTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGAC	30748	0.15376363347046443	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAG	25100	0.12551929231522885	No Hit
CTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAG	21800	0.10901675587537804	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	21548	0.10775656218360763	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTACAGCTCGTCCTTCTT	21227	0.10615131545718577	No Hit
CTTTGCTCAGGGCGGACTGGGTGCTCAGGTAGTGGTTGTCGGGCAGCAGC	20508	0.10255576282074555	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	17730	60.642376	45
CGTATGC	17775	60.547924	44
GCACACG	18925	59.79248	11
TATGCCG	17905	59.776005	46
ACGTCTG	19115	58.922318	15
ACACGTC	19590	57.530224	13
CACACGT	19790	57.05535	12
CTCGTAT	18160	55.949333	42
TCGTATG	18995	55.75622	43
CACGTCT	20260	55.61028	14
AGCACAC	20600	55.032936	10
TCACTCG	20680	53.83691	30
CACTCGA	20910	53.261337	31
GTCACTC	21260	52.318783	29
CAGTCAC	21555	51.71641	27
GCCGTCT	19950	51.68357	49
AGTCACT	21630	51.601818	28
CGTCTGA	21915	51.45765	16
GAGCACA	22125	51.39803	9
TCCAGTC	21895	51.15298	25