H3KMLBGXC_n01_0801-10G-SVP.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3KMLBGXC_n01_0801-10G-SVP.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15713242
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	152934	0.9732810071912593	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTATAATATCTCGTATGC	64031	0.40749706521416773	TruSeq Adapter, Index 9 (97% over 36bp)
CTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGAC	40092	0.25514785554756936	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAG	24670	0.15700133683424464	No Hit
CTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAG	23782	0.15135005239529817	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	22397	0.1425358306070765	No Hit
CCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTA	19678	0.1252319540423294	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19178	0.12204992451589558	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	8680	56.975025	44
GTATGCC	8685	56.740734	45
TATGCCG	9020	54.478188	46
GCACACG	9735	52.31336	11
ACGTCTG	9775	51.990376	15
TCGTATG	9520	51.506645	43
CACACGT	9980	51.17005	12
CTCGTAT	9460	50.90839	42
TACTCTA	26725	49.625187	4
AGCACAC	10240	49.59673	10
GTACTCT	26795	49.208153	3
ACACGTC	10465	48.797955	13
CACGTCT	10670	47.827305	14
ACTCTAG	29800	47.06503	5
GAGCACA	11280	45.39605	9
CACTATA	11210	45.271603	31
TCTAGTT	29590	44.90083	7
CTATAAT	11350	44.805412	33
TATCTCG	10770	44.35858	39
AGTCACT	11400	44.33315	28