H3KCTBGX7_n01_nlp7_27.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3KCTBGX7_n01_nlp7_27.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10903222
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	107139	0.9826361418670555	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACGATATCTCGTATGC	39841	0.3654057488694626	TruSeq Adapter, Index 7 (97% over 35bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	25575	0.23456369135655494	No Hit
TGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTG	15631	0.143361292652759	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	13396	0.122862764786409	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAG	12919	0.11848791118808732	No Hit
CTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGAC	11797	0.1081973750511546	No Hit
GTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGACTATCAG	11345	0.10405181147370933	No Hit
GTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGACTAT	11288	0.10352903022611115	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5410	54.601254	46
CGTATGC	5585	53.26663	44
GTATGCC	5705	51.96192	45
CTCGTAT	5890	50.092384	42
TCGTATG	6410	46.465534	43
TACTCTA	19575	45.68907	4
GTACTCT	19865	44.95138	3
ACGATAT	6685	44.71115	35
TCTAGTT	20160	44.427834	7
TTGTACT	20110	44.284332	1
ATGCCGT	6975	42.400787	47
CACGATA	7095	42.22589	34
TGTACTC	21680	41.139717	2
GCCGTCT	7190	41.084404	49
ACTCTAG	22380	40.901264	5
CTCTAGT	22310	40.354927	6
ACGTCTG	7665	40.18185	15
TCTCGTA	7345	39.97897	41
CAGTCAC	7695	39.29783	27
CTAGTTG	22820	39.002827	8