FastQCFastQC Report
Sat 30 Jun 2018
H3K23BGX7_n01_del_p.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3K23BGX7_n01_del_p.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20915599
Sequences flagged as poor quality0
Sequence length151
%GC37

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGAGG17405150.0144.625524
TAGAGGC17519550.0144.38325
AGGCAGA20662250.0144.258918
AGTAGAG17433400.0144.253653
GAGGCAG17523950.0144.247577
GGCAGAG20669700.0144.238539
AGAGGCA17570600.0144.187556
TAAGTAG17164850.0144.160231
AAGTAGA17483350.0143.917072
TAAGTAC2960300.0143.265081
GTACAGG3117350.0143.127554
AGTACAG3120400.0142.557133
TACAGGC3144150.0142.143775
AAGTACA3143300.0141.486192
CAGGCAG3200200.0141.161127
ACAGGCA3192950.0141.034996
TCCTTTC19574200.0131.67566145
GAAGTAG269500.0126.004411
GAAGTAC170800.0121.651071
TAACTAG104600.0104.450171
Produced by FastQC (version 0.11.2)