H3JTHAFX2_n01_WT_04.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3JTHAFX2_n01_WT_04.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24948506
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	90736	0.3636931205419675	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	46309	0.18561832920977311	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	37770	0.1513918308374858	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	37471	0.1501933622798896	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	35584	0.14262978312208355	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	33325	0.1335751327153618	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	31565	0.1265206020753307	No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	25497	0.10219850439140525	No Hit
GGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCT	25007	0.10023445892912385	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTACG	3805	40.572067	2
CGTACGG	3890	39.685055	3
GGCGTAC	5320	30.9367	1
GTACGGA	5915	26.69069	4
ACCCGAT	25195	26.379673	68
CCCGATC	25550	26.341908	69
ACGGTCG	3735	25.956661	54
TACGGAA	6100	25.823832	5
ACCGCGT	3945	24.1357	6
TATGCCG	1755	24.130589	46
CCGATCG	30265	23.637363	70
AGACCGC	4140	23.506203	4
GATCGTT	5590	23.420588	5
CGGTCGA	4065	23.332884	55
TGATCGT	5760	22.972452	4
TCGTATG	1765	22.804092	43
ATACGGA	4325	22.25386	33
AATACGG	4535	21.532064	32
CGCCAAT	3355	21.281216	33
CACCCGA	31630	21.20094	67