H3GCWBGX5_n01_ncrtl18.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3GCWBGX5_n01_ncrtl18.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17399330
Sequences flagged as poor quality	0
Sequence length	75
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGACTCTAGCAGATCTATCGATTCTAGCATCACTGGTGGACAGCAAATCGGTCGGGATCTGTAGGACGATCAC	37022	0.2127783081302556	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	24199	0.13908006802560788	TruSeq Adapter, Index 20 (97% over 44bp)
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTACAGCTCGTCCTTCTTGTACAGCTCGTCCATGCCGAGAGTG	19347	0.11119393677802537	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	6365	45.367523	48
CGTATGC	6655	43.339603	46
GTATGCC	6825	42.411366	47
GGCCTTA	7100	40.77137	36
GCACACG	7370	40.442738	11
GTCACGT	7625	38.597538	29
CGTGGCC	7680	37.737534	33
CTCGTAT	7720	37.450787	44
TCGTATG	7805	37.35193	45
ACGTCTG	8035	37.0095	15
GTGGCCT	8025	36.243843	34
AGTCACG	8205	36.0798	28
CACACGT	8280	35.99815	12
ACACGTC	8395	35.58721	13
TCACGTG	8230	35.550766	30
GCCTTAT	8210	35.091244	37
TATCTCG	8270	34.91929	41
AGCACAC	8640	34.617813	10
CACGTCT	8870	33.68157	14
CACGTGG	8700	33.590546	31