[2021-09-02 12:49:26,927] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-09-02 12:49:26,927] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-09-02 12:49:26,927] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-09-02 12:49:26,928] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-09-02 12:49:26,928] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-09-02 12:49:26,928] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H3GCHAFX3/merged [2021-09-02 12:49:28,292] multiqc [WARNING] MultiQC Version v1.11 now available! [2021-09-02 12:49:28,293] multiqc [INFO ] This is MultiQC v1.9 [2021-09-02 12:49:28,293] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H3GCHAFX3/merged [2021-09-02 12:49:28,293] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H3GCHAFX3/merged [2021-09-02 12:49:28,293] multiqc [INFO ] Template : default [2021-09-02 12:49:28,293] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-09-02 12:49:28,293] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H3GCHAFX3/merged [2021-09-02 12:49:28,293] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-09-02 12:49:28,293] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-9701186/tmp232gkn_k [2021-09-02 12:49:28,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_7797in_hop1-NH_fastqc.html [2021-09-02 12:49:28,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_7797in_hop1-NH_fastqc.html [2021-09-02 12:49:28,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_5187in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:28,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_5187in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:28,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251chp_hop1-NH_fastqc.html [2021-09-02 12:49:28,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251chp_hop1-NH_fastqc.html [2021-09-02 12:49:28,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_undetermined_fastqc.html [2021-09-02 12:49:28,538] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517chp_hop1-NH_fastqc.html [2021-09-02 12:49:28,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797chp_hop1-NH_fastqc.html [2021-09-02 12:49:28,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797chp_hop1-NH_fastqc.html [2021-09-02 12:49:28,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_5187chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:28,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_5187chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_5187in_hop1-NH_fastqc.html [2021-09-02 12:49:29,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_5187in_hop1-NH_fastqc.html [2021-09-02 12:49:29,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_5187chp_hop1-NH_fastqc.html [2021-09-02 12:49:29,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_5187chp_hop1-NH_fastqc.html [2021-09-02 12:49:29,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_10517in_hop1-NH_fastqc.html [2021-09-02 12:49:29,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_10517in_hop1-NH_fastqc.html [2021-09-02 12:49:29,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_7797chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_7797chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,300] multiqc [DEBUG ] File ignored by hicexplorer because it 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hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_5187in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_5187in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120in_hop1-NH_fastqc.html [2021-09-02 12:49:29,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120in_hop1-NH_fastqc.html [2021-09-02 12:49:29,589] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9120in_hop1-NH_fastqc.html [2021-09-02 12:49:29,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9120in_hop1-NH_fastqc.html [2021-09-02 12:49:29,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_undetermined_fastqc.html [2021-09-02 12:49:29,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_undetermined_fastqc.html [2021-09-02 12:49:29,710] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_5187chp_hop1-NH_fastqc.html [2021-09-02 12:49:29,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_5187chp_hop1-NH_fastqc.html [2021-09-02 12:49:29,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,808] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_10517chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_10517chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120chp_hop1-NH_fastqc.html [2021-09-02 12:49:29,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120chp_hop1-NH_fastqc.html [2021-09-02 12:49:29,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9120chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:29,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9120chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251in_hop1-NH_fastqc.html [2021-09-02 12:49:30,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251in_hop1-NH_fastqc.html [2021-09-02 12:49:30,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797in_hop1-NH_fastqc.html [2021-09-02 12:49:30,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_7797in_hop1-NH_fastqc.html [2021-09-02 12:49:30,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9251in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_10517in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_10517in-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251chp_hop1-NH_fastqc.html [2021-09-02 12:49:30,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251chp_hop1-NH_fastqc.html [2021-09-02 12:49:30,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251in_hop1-NH_fastqc.html [2021-09-02 12:49:30,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n01_9251in_hop1-NH_fastqc.html [2021-09-02 12:49:30,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517in_hop1-NH_fastqc.html [2021-09-02 12:49:30,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517in_hop1-NH_fastqc.html [2021-09-02 12:49:30,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_10517chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3GCHAFX3_n02_9120chp-hop1-NH-SPKIN_fastqc.html [2021-09-02 12:49:30,977] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-09-02 12:49:30,980] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-09-02 12:49:30,989] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-09-02 12:49:31,000] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 21 samples (table) [2021-09-02 12:49:31,010] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-09-02 12:49:31,019] multiqc [DEBUG ] No samples found: conpair [2021-09-02 12:49:31,025] multiqc [DEBUG ] No samples found: peddy [2021-09-02 12:49:31,030] multiqc [DEBUG ] No samples found: somalier [2021-09-02 12:49:31,036] multiqc [DEBUG ] No samples found: methylQA [2021-09-02 12:49:31,047] multiqc [DEBUG ] No samples found: mosdepth [2021-09-02 12:49:31,053] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-09-02 12:49:31,057] multiqc [DEBUG ] No samples found: qualimap [2021-09-02 12:49:31,065] multiqc [DEBUG ] No samples found: preseq [2021-09-02 12:49:31,073] multiqc [DEBUG ] No samples found: quast [2021-09-02 12:49:31,082] multiqc [DEBUG ] No samples found: qorts [2021-09-02 12:49:31,091] multiqc [DEBUG ] No samples found: rna_seqc [2021-09-02 12:49:31,098] multiqc [DEBUG ] No samples found: rockhopper [2021-09-02 12:49:31,106] multiqc [DEBUG ] No samples found: rsem [2021-09-02 12:49:31,125] multiqc [DEBUG ] No samples found: rseqc [2021-09-02 12:49:31,133] multiqc [DEBUG ] No samples found: busco [2021-09-02 12:49:31,140] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-09-02 12:49:31,145] multiqc [DEBUG ] No samples found: disambiguate [2021-09-02 12:49:31,154] multiqc [DEBUG ] No samples found: supernova [2021-09-02 12:49:31,177] multiqc [DEBUG ] No samples found: deeptools [2021-09-02 12:49:31,187] multiqc [DEBUG ] No samples found: sargasso [2021-09-02 12:49:31,194] multiqc [DEBUG ] No samples found: verifybamid [2021-09-02 12:49:31,203] multiqc [DEBUG ] No samples found: mirtrace [2021-09-02 12:49:31,210] multiqc [DEBUG ] No samples found: happy [2021-09-02 12:49:31,218] multiqc [DEBUG ] No samples found: mirtop [2021-09-02 12:49:31,228] multiqc [DEBUG ] No samples found: homer [2021-09-02 12:49:31,237] multiqc [DEBUG ] No samples found: macs2 [2021-09-02 12:49:31,244] multiqc [DEBUG ] No samples found: theta2 [2021-09-02 12:49:31,253] multiqc [DEBUG ] No samples found: snpeff [2021-09-02 12:49:31,261] multiqc [DEBUG ] No samples found: gatk [2021-09-02 12:49:31,267] multiqc [DEBUG ] No samples found: htseq [2021-09-02 12:49:31,276] multiqc [DEBUG ] No samples found: bcftools [2021-09-02 12:49:31,285] multiqc [DEBUG ] No samples found: featureCounts [2021-09-02 12:49:31,294] multiqc [DEBUG ] No samples found: fgbio [2021-09-02 12:49:31,318] multiqc [DEBUG ] No samples found: dragen [2021-09-02 12:49:31,326] multiqc [DEBUG ] No samples found: dedup [2021-09-02 12:49:31,334] multiqc [DEBUG ] No samples found: damageprofiler [2021-09-02 12:49:31,371] multiqc [DEBUG ] No samples found: biobambam2 [2021-09-02 12:49:31,378] multiqc [DEBUG ] No samples found: mtnucratio [2021-09-02 12:49:31,381] multiqc [DEBUG ] No samples found: picard [2021-09-02 12:49:31,389] multiqc [DEBUG ] No samples found: prokka [2021-09-02 12:49:31,397] multiqc [DEBUG ] No samples found: samblaster [2021-09-02 12:49:31,413] multiqc [DEBUG ] No samples found: samtools [2021-09-02 12:49:31,420] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-09-02 12:49:31,429] multiqc [DEBUG ] No samples found: bamtools [2021-09-02 12:49:31,435] multiqc [DEBUG ] No samples found: jellyfish [2021-09-02 12:49:31,451] multiqc [DEBUG ] No samples found: vcftools [2021-09-02 12:49:31,458] multiqc [DEBUG ] No samples found: longranger [2021-09-02 12:49:31,463] multiqc [DEBUG ] No samples found: stacks [2021-09-02 12:49:31,472] multiqc [DEBUG ] No samples found: varscan2 [2021-09-02 12:49:31,500] multiqc [DEBUG ] No samples found: bbmap [2021-09-02 12:49:31,508] multiqc [DEBUG ] No samples found: bismark [2021-09-02 12:49:31,516] multiqc [DEBUG ] No samples found: biscuit [2021-09-02 12:49:31,523] multiqc [DEBUG ] No samples found: hicexplorer [2021-09-02 12:49:31,532] multiqc [DEBUG ] No samples found: hicup [2021-09-02 12:49:31,537] multiqc [DEBUG ] No samples found: hicpro [2021-09-02 12:49:31,543] multiqc [DEBUG ] No samples found: salmon [2021-09-02 12:49:31,551] multiqc [DEBUG ] No samples found: kallisto [2021-09-02 12:49:31,557] multiqc [DEBUG ] No samples found: slamdunk [2021-09-02 12:49:31,565] multiqc [DEBUG ] No samples found: star [2021-09-02 12:49:31,572] multiqc [DEBUG ] No samples found: hisat2 [2021-09-02 12:49:31,578] multiqc [DEBUG ] No samples found: tophat [2021-09-02 12:49:31,584] multiqc [DEBUG ] No samples found: bowtie2 [2021-09-02 12:49:31,588] multiqc [DEBUG ] No samples found: bowtie1 [2021-09-02 12:49:31,595] multiqc [DEBUG ] No samples found: snpsplit [2021-09-02 12:49:31,603] multiqc [DEBUG ] No samples found: kat [2021-09-02 12:49:31,611] multiqc [DEBUG ] No samples found: leehom [2021-09-02 12:49:31,618] multiqc [DEBUG ] No samples found: adapterRemoval [2021-09-02 12:49:31,623] multiqc [DEBUG ] No samples found: clipandmerge [2021-09-02 12:49:31,629] multiqc [DEBUG ] No samples found: cutadapt [2021-09-02 12:49:31,634] multiqc [DEBUG ] No samples found: flexbar [2021-09-02 12:49:31,641] multiqc [DEBUG ] No samples found: kaiju [2021-09-02 12:49:31,648] multiqc [DEBUG ] No samples found: kraken [2021-09-02 12:49:31,657] multiqc [DEBUG ] No samples found: malt [2021-09-02 12:49:31,664] multiqc [DEBUG ] No samples found: trimmomatic [2021-09-02 12:49:31,672] multiqc [DEBUG ] No samples found: sickle [2021-09-02 12:49:31,679] multiqc [DEBUG ] No samples found: skewer [2021-09-02 12:49:31,685] multiqc [DEBUG ] No samples found: sortmerna [2021-09-02 12:49:31,692] multiqc [DEBUG ] No samples found: biobloomtools [2021-09-02 12:49:31,699] multiqc [DEBUG ] No samples found: fastq_screen [2021-09-02 12:49:31,705] multiqc [DEBUG ] No samples found: afterqc [2021-09-02 12:49:31,711] multiqc [DEBUG ] No samples found: fastp [2021-09-02 12:49:33,077] multiqc.modules.fastqc.fastqc [INFO ] Found 42 reports [2021-09-02 12:49:33,431] multiqc [DEBUG ] No samples found: pycoqc [2021-09-02 12:49:33,440] multiqc [DEBUG ] No samples found: minionqc [2021-09-02 12:49:33,447] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-09-02 12:49:33,453] multiqc [DEBUG ] No samples found: clusterflow [2021-09-02 12:49:33,460] multiqc [DEBUG ] No samples found: bcl2fastq [2021-09-02 12:49:33,470] multiqc [DEBUG ] No samples found: interop [2021-09-02 12:49:33,476] multiqc [DEBUG ] No samples found: ivar [2021-09-02 12:49:33,482] multiqc [DEBUG ] No samples found: flash [2021-09-02 12:49:33,487] multiqc [DEBUG ] No samples found: seqyclean [2021-09-02 12:49:33,487] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-09-02 12:49:33,487] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-09-02 12:49:33,487] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-09-02 12:49:33,487] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-09-02 12:49:33,537] multiqc [INFO ] Compressing plot data [2021-09-02 12:49:34,241] multiqc [INFO ] Report : multiqc_report.html [2021-09-02 12:49:34,241] multiqc [INFO ] Data : multiqc_data [2021-09-02 12:49:34,241] multiqc [DEBUG ] Moving data file from '/state/partition1/job-9701186/tmp232gkn_k/multiqc_data' to '/scratch/gencore/logs/html/H3GCHAFX3/merged/multiqc_data' [2021-09-02 12:49:34,373] multiqc [INFO ] MultiQC complete