FastQCFastQC Report
Thu 2 Sep 2021
H3GCHAFX3_n02_10517chp_hop1-NH.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3GCHAFX3_n02_10517chp_hop1-NH.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5321769
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2446854.597813245933824No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG91650.17221717064382164No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGG79020.14848446071221805No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGG53630.10077476117433884No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)