FastQCFastQC Report
Thu 2 Sep 2021
H3GCHAFX3_n01_9120chp-hop1-NH-SPKIN.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3GCHAFX3_n01_9120chp-hop1-NH-SPKIN.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7809400
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCGGGGGT158010.20233308576843292TruSeq Adapter, Index 21 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCGGGGTT138350.1771582964120163TruSeq Adapter, Index 21 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)