H3FTCBGXC_n02_MT_30978.TR3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3FTCBGXC_n02_MT_30978.TR3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24080095
Sequences flagged as poor quality	0
Sequence length	151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCACCGGCCCGTCT	58488	0.2428894072054118	No Hit
GTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCACCGGCCCGT	38854	0.1613531840302125	No Hit
CCGCTACGGACCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCCCAGGCA	34567	0.14355009812046007	No Hit
CGAACGCCGGGTTAAGGCGCCCGATGCCGACGCTCATCAGACCCCAGAAA	30746	0.1276822205228011	No Hit
TCCAGCATTAGAGGTAACAACTAGAGTACAATTTTTTCCAATAGAATCAC	29626	0.12303107608171812	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATC	27020	0.11220885964112683	Illumina Single End PCR Primer 1 (96% over 33bp)
GTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAG	24680	0.10249129000529277	No Hit

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGATTAT	34065	42.969242	145
AGCATTA	13160	42.514046	4
GCATTAG	16805	33.93929	5
TGGGATC	21265	30.9688	2
GATCCCG	31120	30.791542	3
CATTAGA	18270	29.94849	6
GGGATCC	33940	28.31643	1
GGATCCC	34180	27.96709	2
TCCCGAG	34675	27.880842	5
ATCCCGA	36110	27.174541	4
ATTAGTT	24670	26.977598	145
AGTGTAT	22885	26.515776	145
CCCGAGG	37575	26.018335	6
CCGAGGC	41625	24.601095	7
CAGCATT	23845	24.439837	3
TACGGAC	23365	24.286364	5
CCAGCAT	23195	24.20196	2
GTGGGAT	28730	23.800035	1
GCTACGG	25470	22.425226	3
AACGCCG	25065	21.948944	3