[2019-11-20 20:51:55,855] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2019-11-20 20:51:55,855] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2019-11-20 20:51:55,856] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Loading config settings from: /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml
[2019-11-20 20:51:55,857] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/H3CG5BCX3/2
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2019-11-20 20:51:55,857] multiqc [INFO ] This is MultiQC v1.0.dev0
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/H3CG5BCX3/2
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/H3CG5BCX3/2
[2019-11-20 20:51:55,857] multiqc [INFO ] Template : default
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2019-11-20 20:51:55,857] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/H3CG5BCX3/2'
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2019-11-20 20:51:55,857] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-5731698/tmpMnoWrx
[2019-11-20 20:51:56,083] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:56,112] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 9 samples (table)
[2019-11-20 20:51:56,119] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2019-11-20 20:51:56,121] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2019-11-20 20:51:56,130] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:56,135] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:56,139] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2019-11-20 20:51:56,150] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:56,747] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:56,753] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,282] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,287] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,293] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,425] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,566] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,695] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,826] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:57,831] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:59,339] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:59,346] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:59,475] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:51:59,894] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:00,024] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:00,035] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:00,040] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:00,046] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:00,178] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,003] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2019-11-20 20:52:01,010] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,015] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,146] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,274] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,405] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,536] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,666] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:01,671] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:02,642] multiqc.modules.fastqc.fastqc [INFO ] Found 18 reports
[2019-11-20 20:52:03,393] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H3CG5BCX3/2',)
[2019-11-20 20:52:03,411] multiqc [INFO ] Report : multiqc_report.html
[2019-11-20 20:52:03,414] multiqc [INFO ] Data : multiqc_data
[2019-11-20 20:52:03,414] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5731698/tmpMnoWrx/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/H3CG5BCX3/2/multiqc_data'
[2019-11-20 20:52:03,416] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5731698/tmpMnoWrx/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/H3CG5BCX3/2/multiqc_data'
[2019-11-20 20:52:03,418] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5731698/tmpMnoWrx/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/H3CG5BCX3/2/multiqc_data'
[2019-11-20 20:52:03,515] multiqc [INFO ] MultiQC complete