FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB3_24.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB3_24.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4733581
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC94770.20020783419571778No Hit
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC78250.16530825182879516No Hit
CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA60840.12852848615033735No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG58950.12453573732022331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)