FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB3_13.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB3_13.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8339230
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC211280.2533567247815446No Hit
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC188300.22580022376166622No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG142380.17073518778112606No Hit
CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA137640.165051209763971No Hit
AGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGA112760.135216320931309No Hit
GTTGAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA103660.12430404245955562No Hit
GGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAG101470.12167790071745233No Hit
TGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCA88320.10590905875002847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)