FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB3_12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB3_12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6424341
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC216590.3371396381356469No Hit
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC186280.2899597017032564No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG117850.18344293990620983No Hit
CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA88980.13850447851382733No Hit
GTTGAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA88340.13750826738493488No Hit
TTGAAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA67000.10429085255592753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)