FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB2_9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB2_9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6994185
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC179220.25624143484909245No Hit
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC151920.21720901005621096No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG136830.19563394448388194No Hit
GTTGAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA109830.15703044743597716No Hit
GGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAG86520.12370276165128605No Hit
TTCCCATATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGC71010.1015271972359896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)