FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB2_4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB2_4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7982903
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC148170.18560916999743074No Hit
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC146250.1832040299124266No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG135770.17007597361511217No Hit
GTTGAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA88870.11132541633037504No Hit
TTCCCATATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGC80370.1006776607457212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)