FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB2_18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB2_18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6566533
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC174000.26498001304493557No Hit
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC129200.1967552740540556No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG117660.17918131226935127No Hit
GTTGAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA102490.15607931917801982No Hit
GGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAG86190.13125647887553446No Hit
AGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGA72560.11049971118701453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)