FastQCFastQC Report
Thu 24 Feb 2022
H35CCBGXL_n01_FebB2_15.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH35CCBGXL_n01_FebB2_15.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5614279
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAAGTATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCC150960.2688858177514869No Hit
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC132730.2364150410052653No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG120910.215361580712323No Hit
GTTGAATATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGA86410.15391112554256745No Hit
GGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAG67710.12060319766794632No Hit
TTCCCATATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGC62840.1119288870396359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)