Basic Statistics
Measure | Value |
---|---|
Filename | H33HLBGXB_n02_5P_R-HTO.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8857759 |
Sequences flagged as poor quality | 0 |
Sequence length | 49 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 121681 | 1.3737221796167631 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCACA | 157225 | 0.0 | 42.758343 | 1 |
CATGTTA | 85310 | 0.0 | 42.718258 | 2 |
GTCTAAC | 136925 | 0.0 | 42.670937 | 4 |
TCACATC | 157335 | 0.0 | 42.667522 | 3 |
TTACTAT | 96065 | 0.0 | 42.66026 | 4 |
ATCACAT | 157885 | 0.0 | 42.65913 | 2 |
ACTGTCT | 137175 | 0.0 | 42.654408 | 1 |
CATCGGT | 157115 | 0.0 | 42.65096 | 6 |
CTTACTA | 96010 | 0.0 | 42.64167 | 3 |
ATCGGTC | 156820 | 0.0 | 42.632805 | 7 |
TCGGTCC | 156070 | 0.0 | 42.62584 | 8 |
TGAGCTA | 143750 | 0.0 | 42.608307 | 6 |
CGGTCCC | 155795 | 0.0 | 42.593918 | 9 |
GAGGCTG | 144015 | 0.0 | 42.57666 | 1 |
TAACGGC | 136470 | 0.0 | 42.57507 | 7 |
GGCTGAG | 143860 | 0.0 | 42.562088 | 3 |
TACTATC | 96065 | 0.0 | 42.550842 | 5 |
GAGCTAC | 143750 | 0.0 | 42.539696 | 7 |
TATCCCC | 95010 | 0.0 | 42.536644 | 8 |
GCTGAGC | 143925 | 0.0 | 42.526917 | 4 |