Basic Statistics
Measure | Value |
---|---|
Filename | H33HLBGXB_n02_5P_G-HTO.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9794472 |
Sequences flagged as poor quality | 0 |
Sequence length | 49 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 45629 | 0.4658648266083154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CATGTTA | 135310 | 0.0 | 42.726048 | 2 |
TATCACA | 166360 | 0.0 | 42.710155 | 1 |
CATCGGT | 165730 | 0.0 | 42.679424 | 6 |
TCACATC | 166110 | 0.0 | 42.679283 | 3 |
ATCGGTC | 165355 | 0.0 | 42.673077 | 7 |
GGCTGAG | 163935 | 0.0 | 42.664585 | 3 |
TCGGTCC | 164470 | 0.0 | 42.63778 | 8 |
GAGGCTG | 164210 | 0.0 | 42.63437 | 1 |
ATCACAT | 166920 | 0.0 | 42.60719 | 2 |
CGGTCCC | 164265 | 0.0 | 42.592167 | 9 |
CTTACTA | 109295 | 0.0 | 42.583298 | 3 |
AGCTTAC | 109275 | 0.0 | 42.563538 | 1 |
GGTCCCA | 229945 | 0.0 | 42.54749 | 10 |
ATGTTAC | 135885 | 0.0 | 42.543884 | 3 |
CCGTCCC | 132770 | 0.0 | 42.5374 | 9 |
TATCCCC | 107785 | 0.0 | 42.53181 | 8 |
TGTTACC | 134680 | 0.0 | 42.50153 | 4 |
GTTACCG | 134265 | 0.0 | 42.495415 | 5 |
TGAGCTA | 164765 | 0.0 | 42.49359 | 6 |
CGTATTC | 74285 | 0.0 | 42.482964 | 7 |