[2021-06-05 22:03:52,662] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-06-05 22:03:52,662] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-06-05 22:03:52,662] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-05 22:03:52,663] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-06-05 22:03:52,663] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-06-05 22:03:52,663] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H2Y5VBGXJ/merged [2021-06-05 22:03:54,012] multiqc [WARNING] MultiQC Version v1.10.1 now available! [2021-06-05 22:03:54,012] multiqc [INFO ] This is MultiQC v1.9 [2021-06-05 22:03:54,012] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H2Y5VBGXJ/merged [2021-06-05 22:03:54,012] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H2Y5VBGXJ/merged [2021-06-05 22:03:54,012] multiqc [INFO ] Template : default [2021-06-05 22:03:54,012] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-06-05 22:03:54,012] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H2Y5VBGXJ/merged [2021-06-05 22:03:54,013] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-06-05 22:03:54,013] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-7400296/tmp8aq1h8sp [2021-06-05 22:03:54,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_F12_fd_fastqc.html [2021-06-05 22:03:54,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_F12_fd_fastqc.html [2021-06-05 22:03:54,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D07_fd_fastqc.html [2021-06-05 22:03:54,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D07_fd_fastqc.html [2021-06-05 22:03:54,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D02_fd_fastqc.html [2021-06-05 22:03:54,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D02_fd_fastqc.html [2021-06-05 22:03:54,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A11_fd_fastqc.html [2021-06-05 22:03:54,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A11_fd_fastqc.html [2021-06-05 22:03:54,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E12_fd_fastqc.html [2021-06-05 22:03:54,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E12_fd_fastqc.html [2021-06-05 22:03:54,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C11_fd_fastqc.html [2021-06-05 22:03:54,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C11_fd_fastqc.html [2021-06-05 22:03:54,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B08_fd_fastqc.html [2021-06-05 22:03:54,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B08_fd_fastqc.html [2021-06-05 22:03:54,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B03_fd_fastqc.html [2021-06-05 22:03:54,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B03_fd_fastqc.html [2021-06-05 22:03:54,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B02_fd_fastqc.html [2021-06-05 22:03:54,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B02_fd_fastqc.html [2021-06-05 22:03:54,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B09_fd_fastqc.html [2021-06-05 22:03:54,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B09_fd_fastqc.html [2021-06-05 22:03:54,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E10_fd_fastqc.html [2021-06-05 22:03:54,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E10_fd_fastqc.html [2021-06-05 22:03:54,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B11_fd_fastqc.html [2021-06-05 22:03:54,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B11_fd_fastqc.html [2021-06-05 22:03:54,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B07_fd_fastqc.html [2021-06-05 22:03:54,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B07_fd_fastqc.html [2021-06-05 22:03:54,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A10_fd_fastqc.html [2021-06-05 22:03:54,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A10_fd_fastqc.html [2021-06-05 22:03:54,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A12_fd_fastqc.html [2021-06-05 22:03:54,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A12_fd_fastqc.html [2021-06-05 22:03:54,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D06_fd_fastqc.html [2021-06-05 22:03:54,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D06_fd_fastqc.html [2021-06-05 22:03:54,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A04_fd_fastqc.html [2021-06-05 22:03:54,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A04_fd_fastqc.html [2021-06-05 22:03:54,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C07_fd_fastqc.html [2021-06-05 22:03:54,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C07_fd_fastqc.html [2021-06-05 22:03:54,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D08_fd_fastqc.html [2021-06-05 22:03:54,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D08_fd_fastqc.html [2021-06-05 22:03:54,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B10_fd_fastqc.html [2021-06-05 22:03:54,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B10_fd_fastqc.html [2021-06-05 22:03:55,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C05_fd_fastqc.html [2021-06-05 22:03:55,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C05_fd_fastqc.html [2021-06-05 22:03:55,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A05_fd_fastqc.html [2021-06-05 22:03:55,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A05_fd_fastqc.html [2021-06-05 22:03:55,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B06_fd_fastqc.html [2021-06-05 22:03:55,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B06_fd_fastqc.html [2021-06-05 22:03:55,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A02_fd_fastqc.html [2021-06-05 22:03:55,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A02_fd_fastqc.html [2021-06-05 22:03:55,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A03_fd_fastqc.html [2021-06-05 22:03:55,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A03_fd_fastqc.html [2021-06-05 22:03:55,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B12_fd_fastqc.html [2021-06-05 22:03:55,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B12_fd_fastqc.html [2021-06-05 22:03:55,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A06_fd_fastqc.html [2021-06-05 22:03:55,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A06_fd_fastqc.html [2021-06-05 22:03:55,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D03_fd_fastqc.html [2021-06-05 22:03:55,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D03_fd_fastqc.html [2021-06-05 22:03:55,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E03_fd_fastqc.html [2021-06-05 22:03:55,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E03_fd_fastqc.html [2021-06-05 22:03:55,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A08_fd_fastqc.html [2021-06-05 22:03:55,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A08_fd_fastqc.html [2021-06-05 22:03:55,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C06_fd_fastqc.html [2021-06-05 22:03:55,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C06_fd_fastqc.html [2021-06-05 22:03:55,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D12_fd_fastqc.html [2021-06-05 22:03:55,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D12_fd_fastqc.html [2021-06-05 22:03:55,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C04_fd_fastqc.html [2021-06-05 22:03:55,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C04_fd_fastqc.html [2021-06-05 22:03:55,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B05_fd_fastqc.html [2021-06-05 22:03:55,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B05_fd_fastqc.html [2021-06-05 22:03:55,616] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E07_fd_fastqc.html [2021-06-05 22:03:55,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_E07_fd_fastqc.html [2021-06-05 22:03:55,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B01_fd_fastqc.html [2021-06-05 22:03:55,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B01_fd_fastqc.html [2021-06-05 22:03:55,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_G11_fd_fastqc.html [2021-06-05 22:03:55,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_G11_fd_fastqc.html [2021-06-05 22:03:55,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C02_fd_fastqc.html [2021-06-05 22:03:55,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C02_fd_fastqc.html [2021-06-05 22:03:55,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C03_fd_fastqc.html [2021-06-05 22:03:55,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C03_fd_fastqc.html [2021-06-05 22:03:55,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B04_fd_fastqc.html [2021-06-05 22:03:55,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_B04_fd_fastqc.html [2021-06-05 22:03:55,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C12_fd_fastqc.html [2021-06-05 22:03:55,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C12_fd_fastqc.html [2021-06-05 22:03:55,924] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A09_fd_fastqc.html [2021-06-05 22:03:55,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A09_fd_fastqc.html [2021-06-05 22:03:55,968] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A07_fd_fastqc.html [2021-06-05 22:03:55,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A07_fd_fastqc.html [2021-06-05 22:03:56,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D10_fd_fastqc.html [2021-06-05 22:03:56,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_D10_fd_fastqc.html [2021-06-05 22:03:56,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A01_fd_fastqc.html [2021-06-05 22:03:56,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_A01_fd_fastqc.html [2021-06-05 22:03:56,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C01_fd_fastqc.html [2021-06-05 22:03:56,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H2Y5VBGXJ_n01_S11_R2_C01_fd_fastqc.html [2021-06-05 22:03:56,589] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-06-05 22:03:56,591] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-06-05 22:03:56,769] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 385 samples (table) [2021-06-05 22:03:56,779] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-06-05 22:03:56,780] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-06-05 22:03:56,785] multiqc [DEBUG ] No samples found: conpair [2021-06-05 22:03:56,790] multiqc [DEBUG ] No samples found: peddy [2021-06-05 22:03:56,794] multiqc [DEBUG ] No samples found: somalier [2021-06-05 22:03:56,799] multiqc [DEBUG ] No samples found: methylQA [2021-06-05 22:03:56,806] multiqc [DEBUG ] No samples found: mosdepth [2021-06-05 22:03:56,810] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-05 22:03:56,814] multiqc [DEBUG ] No samples found: qualimap [2021-06-05 22:03:56,819] multiqc [DEBUG ] No samples found: preseq [2021-06-05 22:03:56,823] multiqc [DEBUG ] No samples found: quast [2021-06-05 22:03:56,828] multiqc [DEBUG ] No samples found: qorts [2021-06-05 22:03:56,832] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-05 22:03:56,837] multiqc [DEBUG ] No samples found: rockhopper [2021-06-05 22:03:56,842] multiqc [DEBUG ] No samples found: rsem [2021-06-05 22:03:56,851] multiqc [DEBUG ] No samples found: rseqc [2021-06-05 22:03:56,855] multiqc [DEBUG ] No samples found: busco [2021-06-05 22:03:56,860] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-05 22:03:56,864] multiqc [DEBUG ] No samples found: disambiguate [2021-06-05 22:03:56,869] multiqc [DEBUG ] No samples found: supernova [2021-06-05 22:03:56,881] multiqc [DEBUG ] No samples found: deeptools [2021-06-05 22:03:56,886] multiqc [DEBUG ] No samples found: sargasso [2021-06-05 22:03:56,890] multiqc [DEBUG ] No samples found: verifybamid [2021-06-05 22:03:56,895] multiqc [DEBUG ] No samples found: mirtrace [2021-06-05 22:03:56,899] multiqc [DEBUG ] No samples found: happy [2021-06-05 22:03:56,904] multiqc [DEBUG ] No samples found: mirtop [2021-06-05 22:03:56,910] multiqc [DEBUG ] No samples found: homer [2021-06-05 22:03:56,914] multiqc [DEBUG ] No samples found: macs2 [2021-06-05 22:03:56,918] multiqc [DEBUG ] No samples found: theta2 [2021-06-05 22:03:56,923] multiqc [DEBUG ] No samples found: snpeff [2021-06-05 22:03:56,929] multiqc [DEBUG ] No samples found: gatk [2021-06-05 22:03:56,934] multiqc [DEBUG ] No samples found: htseq [2021-06-05 22:03:56,939] multiqc [DEBUG ] No samples found: bcftools [2021-06-05 22:03:56,943] multiqc [DEBUG ] No samples found: featureCounts [2021-06-05 22:03:56,949] multiqc [DEBUG ] No samples found: fgbio [2021-06-05 22:03:56,962] multiqc [DEBUG ] No samples found: dragen [2021-06-05 22:03:56,967] multiqc [DEBUG ] No samples found: dedup [2021-06-05 22:03:56,971] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-05 22:03:56,993] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-05 22:03:56,997] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-05 22:03:56,999] multiqc [DEBUG ] No samples found: picard [2021-06-05 22:03:57,004] multiqc [DEBUG ] No samples found: prokka [2021-06-05 22:03:57,008] multiqc [DEBUG ] No samples found: samblaster [2021-06-05 22:03:57,016] multiqc [DEBUG ] No samples found: samtools [2021-06-05 22:03:57,021] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-05 22:03:57,025] multiqc [DEBUG ] No samples found: bamtools [2021-06-05 22:03:57,029] multiqc [DEBUG ] No samples found: jellyfish [2021-06-05 22:03:57,036] multiqc [DEBUG ] No samples found: vcftools [2021-06-05 22:03:57,040] multiqc [DEBUG ] No samples found: longranger [2021-06-05 22:03:57,045] multiqc [DEBUG ] No samples found: stacks [2021-06-05 22:03:57,049] multiqc [DEBUG ] No samples found: varscan2 [2021-06-05 22:03:57,062] multiqc [DEBUG ] No samples found: bbmap [2021-06-05 22:03:57,066] multiqc [DEBUG ] No samples found: bismark [2021-06-05 22:03:57,071] multiqc [DEBUG ] No samples found: biscuit [2021-06-05 22:03:57,076] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-05 22:03:57,081] multiqc [DEBUG ] No samples found: hicup [2021-06-05 22:03:57,085] multiqc [DEBUG ] No samples found: hicpro [2021-06-05 22:03:57,089] multiqc [DEBUG ] No samples found: salmon [2021-06-05 22:03:57,093] multiqc [DEBUG ] No samples found: kallisto [2021-06-05 22:03:57,098] multiqc [DEBUG ] No samples found: slamdunk [2021-06-05 22:03:57,103] multiqc [DEBUG ] No samples found: star [2021-06-05 22:03:57,107] multiqc [DEBUG ] No samples found: hisat2 [2021-06-05 22:03:57,112] multiqc [DEBUG ] No samples found: tophat [2021-06-05 22:03:57,116] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-05 22:03:57,120] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-05 22:03:57,125] multiqc [DEBUG ] No samples found: snpsplit [2021-06-05 22:03:57,129] multiqc [DEBUG ] No samples found: kat [2021-06-05 22:03:57,133] multiqc [DEBUG ] No samples found: leehom [2021-06-05 22:03:57,137] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-05 22:03:57,141] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-05 22:03:57,145] multiqc [DEBUG ] No samples found: cutadapt [2021-06-05 22:03:57,149] multiqc [DEBUG ] No samples found: flexbar [2021-06-05 22:03:57,154] multiqc [DEBUG ] No samples found: kaiju [2021-06-05 22:03:57,158] multiqc [DEBUG ] No samples found: kraken [2021-06-05 22:03:57,163] multiqc [DEBUG ] No samples found: malt [2021-06-05 22:03:57,167] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-05 22:03:57,171] multiqc [DEBUG ] No samples found: sickle [2021-06-05 22:03:57,176] multiqc [DEBUG ] No samples found: skewer [2021-06-05 22:03:57,180] multiqc [DEBUG ] No samples found: sortmerna [2021-06-05 22:03:57,183] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-05 22:03:57,188] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-05 22:03:57,192] multiqc [DEBUG ] No samples found: afterqc [2021-06-05 22:03:57,197] multiqc [DEBUG ] No samples found: fastp [2021-06-05 22:03:57,453] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_F03_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:57,453] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:03:57,519] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_F07_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:57,519] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:03:58,012] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_F08_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:58,013] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:03:58,938] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_C08_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:58,938] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:03:59,120] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_F06_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:59,120] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:03:59,554] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_E06_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:59,554] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:03:59,846] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H2Y5VBGXJ_n01_S11_R2_E04_fd_fastqc.zip' - Bad zip file [2021-06-05 22:03:59,846] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-06-05 22:04:00,094] multiqc.modules.fastqc.fastqc [INFO ] Found 46 reports [2021-06-05 22:04:00,427] multiqc [DEBUG ] No samples found: pycoqc [2021-06-05 22:04:00,432] multiqc [DEBUG ] No samples found: minionqc [2021-06-05 22:04:00,436] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-06-05 22:04:00,441] multiqc [DEBUG ] No samples found: clusterflow [2021-06-05 22:04:00,446] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-05 22:04:00,450] multiqc [DEBUG ] No samples found: interop [2021-06-05 22:04:00,455] multiqc [DEBUG ] No samples found: ivar [2021-06-05 22:04:00,459] multiqc [DEBUG ] No samples found: flash [2021-06-05 22:04:00,464] multiqc [DEBUG ] No samples found: seqyclean [2021-06-05 22:04:00,464] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-06-05 22:04:00,464] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-06-05 22:04:00,464] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-06-05 22:04:00,464] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-06-05 22:04:00,517] multiqc [INFO ] Compressing plot data [2021-06-05 22:04:01,210] multiqc [INFO ] Report : multiqc_report.html [2021-06-05 22:04:01,210] multiqc [INFO ] Data : multiqc_data [2021-06-05 22:04:01,210] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7400296/tmp8aq1h8sp/multiqc_data' to '/scratch/gencore/logs/html/H2Y5VBGXJ/merged/multiqc_data' [2021-06-05 22:04:01,340] multiqc [INFO ] MultiQC complete