H2T2LBGX5_n01_3_14hpc-1000.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H2T2LBGX5_n01_3_14hpc-1000.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	123423159
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	771283	0.6249094628990982	RNA PCR Primer, Index 39 (96% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	341567	0.2767446585936113	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGGGGG	131920	56.250355	69
TATGCCG	164200	51.265877	43
CGTATGC	166640	50.991177	41
ATGCCGT	165585	50.606255	44
GTATGCC	167285	50.43987	42
GCCGTCT	164825	50.20137	46
TGCCGTC	167105	50.045727	45
TCGTATG	171555	49.341022	40
CCGTCTT	176075	46.85401	47
CTGCTTG	183960	44.72512	54
AAAGGGG	169470	43.553097	68
CGTCTTC	193140	42.892185	48
CTCGTAT	194645	42.193848	39
CTTCTGC	202530	40.838207	51
TGCTTGA	203375	40.588055	55
GCTTGAA	208875	39.52585	56
TCTCGTA	197130	39.51566	38
ATCTCGT	191060	39.18123	37
TCTGCTT	214705	38.374557	53
TTCTGCT	215090	38.256348	52