FastQCFastQC Report
Thu 3 Sep 2020
H2NN2BGXF_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NN2BGXF_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381324256
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACCT9985654326.186779736351205No Hit
ACTTCATA9327747524.461458596538897No Hit
TGCCGTGG7836650620.55114637134439No Hit
GAGATGAC7608695719.95334831257102No Hit
GGGGGGGG236921916.213135049032916No Hit
ACTCATAA4418100.11586202373656503No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)