FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_Gbc_c79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_Gbc_c79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1257
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.47732696897374705No Hit
CAGTATAACATTAGAGATAACGAGAATAGTATTATGTTTGCAAATTTTTG20.15910898965791567No Hit
ATATAATGATATCATCGAAGGGCTTATTTCAAAAAAGGACTCGCAATACT20.15910898965791567No Hit
GAAGAGTAAGATCTGAAAAATTTTCAGCAAGTATGGGAGCAAAAAAAGCT20.15910898965791567No Hit
AGGGGAAACTTGTCTCCTTCCAGCTTTTATATCGCTTGATTAAATCCAAC20.15910898965791567No Hit
GCTTGCGTCCTCGCATCCGGCTTGGCAGACTGTTTTTCGTCCTCTTTATC20.15910898965791567No Hit
CCTTGTGGGTAGGGGAATCTCGCATTTCACTGGGCCAGCATCAGTTTTGG20.15910898965791567No Hit
GTATTTCTGTATATTTGTCTTAATACGAAATACGAGTTTTTATTTTATAT20.15910898965791567No Hit
GTGCTGTAATATGCAGTATATTTATTTTGTTGCGAAGGCCTTCTTTGGTC20.15910898965791567No Hit
GTCCGCCCCAATTGCTTAGAATTCCACCCCGCAACGCCGAATTAGGTGAG20.15910898965791567No Hit
CTTATTCTCCTTTCGGGGTTCCGGCTCCCGTGGCCGGGCCCCGGAACTAT20.15910898965791567No Hit
ATTTTACCGTTCACGATTTATTGCATTTTTATATTGGTGATGATATTGTT20.15910898965791567No Hit
TCATTAATCTATTTGGGTCCAGAGGCTATGCTGAAGCCGAGTTCATTTTC20.15910898965791567No Hit
ATTCGGGGCTGATCCGGGTTGAAGACATTGTCAGGTGGGGAGTTTGGCTG20.15910898965791567No Hit
GTTTGGAATTTTGACGACTTGATAATGGCGATCAATTCTAAAATTTCGAA20.15910898965791567No Hit
ACCACCCATAATGTAATAGATCTAATGAATCCATTTGTTTGTTAATAGTT20.15910898965791567No Hit
GGAGAGGGACAAAGGCAGATTTGGAGGTGCAAGAAATTTGTCGTGGTTAG20.15910898965791567No Hit
TTACACAACAACACCGGAGTTAGATGCAACTCTTGGCCATAAATCGGCAC20.15910898965791567No Hit
CTTCTTCCCAGTAGCCTCATCCTTTTACGCTGCCTCTCTGGAACTTGCCA20.15910898965791567No Hit
CGGTAAGACTTACACCGTCACTGAACCAACCACTTTGACTATCACTGACT20.15910898965791567No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)