FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_Gbc_c76.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_Gbc_c76.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12856
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG270.21001866832607344No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTCCG200.006797403652.50000415
GAATAGA851.21336954E-424.70588370
CGAATAG1003.6497362E-421.00000269
ACGAATA1055.0736655E-420.068
GACGAAT1200.001245879817.567
CCGACGA1350.002740069515.55555565
CGACGAA1400.00349190515.066
GCCGACG1550.006866192413.54838764
Produced by FastQC (version 0.11.5)