FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_Gbc_c75.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_Gbc_c75.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63320
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG770.12160454832596335No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTTCC150.002216566869.98894514
GAAGACG200.006904570452.53320332
TCCAGAG200.00692620552.4917072
GGGTTCT200.00692620552.4917077
TTAGACA450.00428137931.1061954
TAAATCC450.00428137931.1061954
Produced by FastQC (version 0.11.5)