FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_DGY2084.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_DGY2084.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53892
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG760.14102278631336748No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTAAGG150.002213374770.000013
TATCACG200.006916288852.537
GTACACT200.006916288852.513
CTATAGG200.006916288852.53
ACCTACC200.006916288852.58
GTCTAAT305.829349E-446.6666681
TGGTGGT450.004272441431.11111366
GTATATA853.8676735E-628.823531
Produced by FastQC (version 0.11.5)