FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_DGY1972.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_DGY1972.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30426
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG440.14461315979754158No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAATGA150.00221024369.9506545
TATAATA200.006906667752.4629972
ATATAAT459.029684E-538.8614771
AATGTTC400.002390953734.9753310
TATATAA450.004258107431.089182
Produced by FastQC (version 0.11.5)