FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_AP3-H02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_AP3-H02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41201
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG590.14320040775709328No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCACCT150.002212709769.9757314
CAGTGTT200.00691427152.4817969
CCACCTG200.00691427152.48179615
GTCTTTA305.8232335E-446.6504861
CATTATG400.002396625534.9878652
ACTTAGA450.004268118631.1003252
ATTATGC450.004268118631.1003253
Produced by FastQC (version 0.11.5)