FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_AP3-F11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_AP3-F11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50117
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG570.11373386276113893No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGAGC150.002212471370.051
GCTGCTG200.006913485552.58
TCCTTTA305.825432E-446.66666413
CTACCCA350.0012443140.00000410
CTCCACA450.00426962231.1111091
TATACAC1250.001731048216.80000170
CTTATAC1450.00465653614.482758568
Produced by FastQC (version 0.11.5)