FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_AP3-E11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_AP3-E11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57678
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATACCG150.00221689369.9783211
TGGCCCT200.00690347952.5292975
TCTGGCA200.00690347952.52929736
TTGCAGT350.001247774539.9876111
TAACTAT500.007135078328.0156254
TTTAATA700.001208525225.013952
TAAAATT800.002641583621.86822517
Produced by FastQC (version 0.11.5)