FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n02_AP3-E10.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n02_AP3-E10.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41576
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG720.173176832788147No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCACCA200.00690567652.499170
TGAGATT305.814355E-446.6658674
TTGTTTC500.00713251227.99951722
TCTCTTA1550.007219220513.54815570
GTCTCTT1600.00890547713.12477569
TGTCTCT1600.00890547713.12477568
Produced by FastQC (version 0.11.5)