FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_bc_anc2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_bc_anc2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42834
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCATTCG150.002210258370.054
TTCCGCT200.006906623552.536
GAGGCTT200.006906623552.547
AATACTA352.0536556E-550.05
ATACTAT552.9459054E-431.8181846
Produced by FastQC (version 0.11.5)