FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_bc_anc1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_bc_anc1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68171
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCAGGG150.002216002269.999277
ACCTCAT200.00692443652.49944718
TTGCGTC200.00692443652.4994474
TGATACG305.840646E-446.6661830
CTGATAC400.002403676534.99963429
AGAAGGG500.007163982427.9997065
TATACAC4955.748157E-47.77769670
TTATACA5158.778466E-47.4756569
CTTATAC5209.7306026E-47.403768568
TCTCTTA6309.946226E-46.66659765
TCTTATA5800.00308804476.637861367
CTCTTAT6100.00523305646.311409566
Produced by FastQC (version 0.11.5)