FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_Gbc_c84.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_Gbc_c84.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43875
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGTG150.002210621570.0000127
TCCGCAC200.0069077552.50000464
TACTTCG200.0069077552.5000049
GCGGTTC200.0069077552.50000423
CATGAGA200.0069077552.50000451
TGGGGCT200.0069077552.50000451
ACTATGC500.007136166628.0000028
CGAGCCC1159.871299E-418.2608770
CCGAGCC1200.001313398517.50000269
TCCGAGC1300.002243939616.15384768
CTCCGAG1350.00288659315.55555667
Produced by FastQC (version 0.11.5)