FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_Gbc_c76.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_Gbc_c76.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12856
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACAGGC901.788508E-423.33333470
AGACAGG1055.0736655E-420.069
GAGACAG1106.941952E-419.09090868
CGAGACA1200.001245879817.567
ACGAGAC1300.002129553116.15384766
CACGAGA1450.00441046114.482758565
CCACGAG1550.006866192413.54838764
Produced by FastQC (version 0.11.5)