FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_Gbc_c75.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_Gbc_c75.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63320
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCACAT150.002215178770.041
AGTCCGT200.0069218852.511
GTTAAAC200.0069218852.53
GCTTAAT200.0069218852.538
ATCCCAT200.0069218852.511
ATCGCGG200.0069218852.560
TTGTAGA305.837171E-446.66666465
TATTATA400.002402262535.02
ATAATAG750.001814054323.3333343
CTCCGAG3200.008681728.7570
Produced by FastQC (version 0.11.5)