FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_Gbc_c70.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_Gbc_c70.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45147
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGCTGG150.002211032770.01
TCCACTC200.006909024452.512
TTAACTG200.006909024452.529
GTATAAC200.006909024452.51
TTTGACG200.006909024452.549
GTGAACC200.006909024452.54
AAATTAT400.002394954735.024
TACTCTG400.002394954735.012
ATTATAG400.002394954735.03
ATCAATA500.007138327.99999855
CTGTCTC5700.0025244016.75438670
Produced by FastQC (version 0.11.5)