FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_DGY2143.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_DGY2143.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44244
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAATCC200.006908116452.49999625
AAGACTC200.006908116452.49999634
TTATCCC200.006908116452.49999617
TTATACT200.006908116452.4999964
GGGTTGT200.006908116452.4999967
TTCCGCC305.8179256E-446.66666468
TCCGCCA350.001242716640.069
GTATTAG350.001242716640.01
CCGCCAA400.002394438334.99999670
TGTCTCT1600.00891630213.12499970
Produced by FastQC (version 0.11.5)