FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_DGY2089.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_DGY2089.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52720
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTAGTC150.002213111870.033
TAGGACT150.002213111870.04
TACATGG200.006915470652.519
CGCAACC200.006915470652.525
TACAGTG305.828208E-446.6666645
GTATATA552.9551404E-431.818181
AGGTCAT450.00427161931.1111137
TCCGAGC800.00263385321.87568
Produced by FastQC (version 0.11.5)