FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_DGY2084.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_DGY2084.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53892
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTTCA200.00691665152.49930618
TGATTCC200.00691665152.49930649
CGCTAAT200.00691665152.49930630
AATCTCG200.00691665152.49930651
CCTGGTC200.00691665152.49930669
CTTAGAA200.00691665152.4993062
ATACCCA500.00715091827.9996285
TATATTA1257.651892E-519.5997415
GTATTAT900.00518552219.4622551
TTATATA1000.009575210517.4997674
TATTATA1452.3857542E-416.8963282
ATTATAT1300.002253129616.1536313
ATATATA2550.001310678210.9904521
Produced by FastQC (version 0.11.5)