FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_DGY2076.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_DGY2076.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35120
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCCGT150.002206929570.06
TCATGGT200.006896300252.546
ATCCAGG200.006896300252.552
GTTGGTA200.006896300252.534
TAATATA450.00425234331.1111094
CTCTGTG450.00425234331.11110960
TGCTATA450.00425234331.1111092
ATAATAT500.007117020427.9999983
GCTATAT500.007117020427.9999983
Produced by FastQC (version 0.11.5)