FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP3-H09.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP3-H09.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41720
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTTAG150.00221211169.982022
CTAGACT150.00221211169.9820255
TAAGACA150.00221211169.982024
CAGTCCT200.006912402352.4865154
GCTACTT200.006912402352.4865145
TATAAAG556.556911E-638.172012
AAGCAAT450.004266833431.1031176
ATATATA1759.912839E-413.9964031
Produced by FastQC (version 0.11.5)