FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP3-H05.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP3-H05.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39208
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAACAC150.002208864370.044
ACATGGA150.002208864370.043
GTCTTCT150.002208864370.018
ACACATT200.006902299452.5000044
GTTAGAG200.006902299452.50000453
TAGTATC459.040278E-538.888894
TATATTA400.002391134435.0000045
GTAGTAT400.002391134435.0000043
TAATTTT450.004258372431.11111315
ATGCAAA450.004258372431.11111311
TTATATA700.001205541125.0000022
Produced by FastQC (version 0.11.5)