FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP3-G02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP3-G02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52430
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACTGAG150.002213160569.9990527
GTCTGGA200.0068895352.5494231
TAGGTAG305.828293E-446.6660275
GTACATT350.001244918139.9994546
GTATATA501.679013E-435.032951
TATGCCA450.004271683331.1106875
AAACAGT500.00714919527.9996196
CAAGATT500.00714919527.99961925
Produced by FastQC (version 0.11.5)