FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP3-F07.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP3-F07.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46770
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCCCA200.006910600752.5000046
TTATACT305.821402E-446.6666644
AGACTAA500.007140937728.00000269
TGTTCAA500.007140937728.00000213
ATAATAT700.001209036425.03
GACTAAG700.001209036425.070
TAATATT850.003737433820.5882364
TCTCCGA2350.0090318410.42553270
CACATCT3207.7358E-49.84375169
ACATCTC3050.0058059529.18032767
Produced by FastQC (version 0.11.5)