FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP3-F03.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP3-F03.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75801
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGTA150.002216874270.068
GTCTACG207.8810146E-570.01
AACGGCT200.00692713852.539
GGCCAAT200.00692713852.543
CTAGCAC200.00692713852.53
CACTGTG305.8445265E-446.6666647
TATACGG305.8445265E-446.6666645
CTATAAT500.007168621828.0000021
TATAATA952.7483507E-422.1052652
GAATAAG800.002644454821.8751
ATCATAT900.005232420319.4444451
CTTTTCT1600.00899391913.12530
TGTCTCT6309.988064E-46.666666570
CTGTCTC6000.00441958766.416666569
Produced by FastQC (version 0.11.5)