FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP3-A12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP3-A12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66508
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCTATA150.002215673270.02
AACAGAG200.006923414852.57
GCTCAGT200.006923414852.511
CAGTTGG400.002403135435.020
TCAGAAC400.002403135435.03
AGAACAG500.00716238428.0000025
GGCATCA500.00716238428.00000257
TAGTATA500.00716238428.0000022
Produced by FastQC (version 0.11.5)