FastQCFastQC Report
Wed 12 Dec 2018
H2NL2AFXY_n01_AP2-F12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2NL2AFXY_n01_AP2-F12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54123
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG150.002213430870.01
AGTGAAG200.006916460652.50000437
TATATGA552.9561738E-431.8181842
TTTGTGT450.004272616531.11110930
ATTTTAG450.004272616531.11110945
GTATATA1055.374669E-420.01
TATATAT1350.002898341515.5555563
Produced by FastQC (version 0.11.5)