H2NL2AFXY_n01_AP2-E01.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	H2NL2AFXY_n01_AP2-E01.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48508
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

$Per base quality graph$

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTGTTC	15	0.0022120434	70.0	54
GAGGTTC	15	0.0022120434	70.0	7
AGTCTAT	15	0.0022120434	70.0	36
CAGACCT	15	0.0022120434	70.0	4
CGCGTTT	20	0.006912158	52.5	17
TTATAGA	35	0.0012439161	40.0	4
AACTGGG	35	0.0012439161	40.0	66
TGGACAG	45	0.0042682863	31.111109	5
TATTATA	50	0.007143542	27.999998	2
CTATTAG	50	0.007143542	27.999998	1
ATATATA	100	1.3631987E-5	24.499998	1
CCGAGCC	120	5.5744604E-5	20.416666	70
GAGCCCA	90	0.0052057677	19.444443	69
TCCGAGC	130	1.0313386E-4	18.846155	69
CTCCGAG	145	2.3793464E-4	16.896551	68
TCTCCGA	170	7.977865E-4	14.411765	67
ATCTCCG	185	0.0015112928	13.243243	66
CATCTCC	205	0.0032678104	11.95122	65
ACATCTC	210	0.0039133187	11.666667	64